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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttcaacaaatagcagctgaacatttggctttggcctgacatttcccgtggaatgcaagattaacatctaacttctgctgtttttcattcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCGAATCTGAACCGCACCGGCATCCGGCACACGGCGCTCCCCAACTTCTGCA

Basic information

species Oryza sativa
transcript LOC_Os01g52610.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88673723|gb|CI727836.1|CI727836
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88438500|gb|CI543604.1|CI543604
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88561662|gb|CI492379.1|CI492379
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88293569|gb|CI505486.1|CI505486
EST:     CTATGCCTGGCTTCTNTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88665387|gb|CI715543.1|CI715543
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88905424|gb|CI712723.1|CI712723
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGCCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAG
EST: gi|88568794|gb|CI499511.1|CI499511
EST:     GTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: GTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88676135|gb|CI730248.1|CI730248
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCG
EST: gi|88265563|gb|CI376465.1|CI376465
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88665469|gb|CI715625.1|CI715625
EST:     CTGTGGTTCAATCCACGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88373132|gb|CI501126.1|CI501126
EST:     CTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88568535|gb|CI499252.1|CI499252
EST:     TCTGTTTACT-GTNGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGC
genomic: TCTGTTTACTGGT-GATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGC
EST: gi|88908672|gb|CI714814.1|CI714814
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGA
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGA
EST: gi|88418513|gb|CI504137.1|CI504137
EST:     TACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88908640|gb|CI713198.1|CI713198
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88322753|gb|CI545459.1|CI545459
EST:     ACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: ACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88467973|gb|CI509788.1|CI509788
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88293983|gb|CI510291.1|CI510291
EST:     TGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACT-GTNGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGC
genomic: TGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGT-GATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGC
EST: gi|88373943|gb|CI508562.1|CI508562
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGA-TG-TGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88673080|gb|CI727195.1|CI727195
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88444263|gb|CI554980.1|CI554980
EST:     CTGTGGTTCAATTCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88466848|gb|CI504842.1|CI504842
EST:     TTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88563036|gb|CI493753.1|CI493753
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88293797|gb|CI507906.1|CI507906
EST:     TTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCATTCGCG
genomic: TTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89171473|gb|CI720532.1|CI720532
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGT
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGT
EST: gi|87034270|gb|CI188894.1|CI188894
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88287818|gb|CI510098.1|CI510098
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89172390|gb|CI721449.1|CI721449
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGNGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88287838|gb|CI510118.1|CI510118
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88677169|gb|CI731282.1|CI731282
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGAT
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGAT
EST: gi|88565471|gb|CI496188.1|CI496188
EST:     GTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: GTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88434564|gb|CI501990.1|CI501990
EST:     TTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88674361|gb|CI728474.1|CI728474
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCA
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCA
EST: gi|88467618|gb|CI507043.1|CI507043
EST:     CTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89172375|gb|CI721434.1|CI721434
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89171844|gb|CI720903.1|CI720903
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGC
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGC
EST: gi|88674258|gb|CI728371.1|CI728371
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCG
EST: gi|88593360|gb|CI713314.1|CI713314
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGA
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGA
EST: gi|88563162|gb|CI493879.1|CI493879
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88665510|gb|CI715666.1|CI715666
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88569299|gb|CI502219.1|CI502219
EST:     TTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88984109|gb|CI723667.1|CI723667
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGC
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGC
EST: gi|88676063|gb|CI730176.1|CI730176
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAG
EST: gi|88418618|gb|CI504242.1|CI504242
EST:     GTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: GTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88564218|gb|CI494935.1|CI494935
EST:     ATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: ATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88561607|gb|CI492324.1|CI492324
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88435412|gb|CI509083.1|CI509083
EST:     TGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|58603692|gb|CK014220.1|CK014220
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88666612|gb|CI718748.1|CI718748
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAG
EST: gi|88669606|gb|CI723451.1|CI723451
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88563112|gb|CI493829.1|CI493829
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88672096|gb|CI726212.1|CI726212
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88669919|gb|CI724035.1|CI724035
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88561462|gb|CI492179.1|CI492179
EST:     CTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88672767|gb|CI726883.1|CI726883
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89171323|gb|CI720382.1|CI720382
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTG
EST: gi|88563967|gb|CI494684.1|CI494684
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88379313|gb|CI511030.1|CI511030
EST:     TGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88672913|gb|CI727028.1|CI727028
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTNTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88461236|gb|CI547416.1|CI547416
EST:     GGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: GGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89172640|gb|CI721699.1|CI721699
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCT
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCT
EST: gi|88674893|gb|CI729006.1|CI729006
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCA
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCA
EST: gi|88668167|gb|CI722906.1|CI722906
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88904834|gb|CI712133.1|CI712133
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTC
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTC
EST: gi|88562449|gb|CI493166.1|CI493166
EST:     ATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: ATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88904665|gb|CI711964.1|CI711964
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGC
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGC
EST: gi|88467927|gb|CI509742.1|CI509742
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGGTGGATCAGCAGCGNCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88674939|gb|CI729052.1|CI729052
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCG
EST: gi|88954538|gb|CI718517.1|CI718517
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCG
EST: gi|89171757|gb|CI720816.1|CI720816
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88675399|gb|CI729512.1|CI729512
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATG
EST: gi|88675163|gb|CI729276.1|CI729276
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88266045|gb|CI376947.1|CI376947
EST:     CTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88435519|gb|CI509190.1|CI509190
EST:     CCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88675882|gb|CI729454.1|CI729454
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAG
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAG
EST: gi|88379626|gb|CI501528.1|CI501528
EST:     TTCTGTTTACTGNTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88435480|gb|CI509151.1|CI509151
EST:     CTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: CTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88379249|gb|CI508767.1|CI508767
EST:     AGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: AGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88467913|gb|CI509728.1|CI509728
EST:     TATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: TATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|88434409|gb|CI501835.1|CI501835
EST:     GGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
genomic: GGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCG
EST: gi|89172622|gb|CI721681.1|CI721681
EST:     CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAG                         ATCTTCGCATATGCAATGATGAGTGCTGGA
genomic: CTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 44 (upstream exon), 8 (downstream exon)
Score: 2

CTGTCTCGCTCAACTTTTATTGACTGCACACAAGGCCGTGAAGAATGCCCCTGTGGTTCAATCCAGGAACTATGCCTGGCTTCTGTTTACTGGTGATCAGgttcgtcaat ... tcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCGAATCTGAACCGCACCGGCATCCGGCACACGGCGCTCCCCAACTTCTGCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccgtggaatgcaagattaacatctaacttctgctgtttttcattcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCGAATCTGAACCGCACCGGCATCCGGCACACGGCGCTCCCCAACTTCTGCA
                      atctaac  putative branch site (score: 2)
                                     tttttcattc  putative PPT
                                     tttttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagttcaacaaatagcagctgaacatttggctttggcctgacatttcccgtggaatgcaagattaacatctaacttctgctgtttttcattcgcgtgcagATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCGAATCTGAACCGCACCGGCATCCGGCACACGGCGCTCCCCAACTTCTGCA

- - -caacaaa
- - - - - - - gcagctg
- - - - - - - - - - - acatttg
- - - - - - - - - - - - - - - - -tggcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca