1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttgttttatccatgttgtaggtctgtagcatactttgattcttcctcctactttcactgattggttggttgaatcacaattttgttgctgatatatagAAGGCTGCAAATAACAAGCCTGTGCTTTCTGAGGATCCCCCTGTGATTTCTGAGCCAGCTCTTGTTAATTCTCACAACGATGGAAATGCTGAAAATTGCA
species | Oryza sativa |
transcript | LOC_Os01g51840.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGGGAAGAAATCAGCCAAGTCCAACTCTACCAAGGCCAAGGATTTGGCG AAGGCTGCAAATAACAAGCCTGTGCTTTCTGAGGATCCCCCTGTGATTTCT
genomic: TCGGGAAGAAATCAGCCAAGTCCAACTCTACCAAGGCCAAGGATTTGGCGgtaagtactt ... tgatatatagAAGGCTGCAAATAACAAGCCTGTGCTTTCTGAGGATCCCCCTGTGATTTCT
cctcctactttcactgattggttggttgaatcacaattttgttgctgatatatagAAGGCTGCAAATAACAAGCCTGTGCTTTCTGAGGATCCCCCTGTGATTTCTGAGCCAGCTCTTGTTAATTCTCACAACGATGGAAATGCTGAAAATTGCA
tgctgat putative branch site (score: 14)
aattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttttatccatgttgtaggtctgtagcatactttgattcttcctcctactttcactgattggttggttgaatcacaattttgttgctgatatatagAAGGCTGCAAATAACAAGCCTGTGCTTTCTGAGGATCCCCCTGTGATTTCTGAGCCAGCTCTTGTTAATTCTCACAACGATGGAAATGCTGAAAATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - catgttg
- - - - - - - - - - - - ctgtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc