Sequence
atgc intronic sequence ATGC exonic sequence...tgttcccgcgcctaccacggccgtattcattctcccatctcccaaggcgagttttcactcactcgtttctttttgtcctctggtttttcttctgcctcagCGAGATCCCGTCGTGCCCCTCCCGCCATTCCAAGTCCGGCCGGTCCGAGGCCGAGGAGACGGCGGCCGCGGAGGCCCGGAGGCGGGAAGCTGACCGGCGA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g49970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggcgagttttcactcactcgtttctttttgtcctctggtttttcttctgcctcagCGAGATCCCGTCGTGCCCCTCCCGCCATTCCAAGTCCGGCCGGTCCGAGGCCGAGGAGACGGCGGCCGCGGAGGCCCGGAGGCGGGAAGCTGACCGGCGA
cactcac putative branch site (score: 2)
ctcgtttctttttgtc CT-rich tract
tttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttcccgcgcctaccacggccgtattcattctcccatctcccaaggcgagttttcactcactcgtttctttttgtcctctggtttttcttctgcctcagCGAGATCCCGTCGTGCCCCTCCCGCCATTCCAAGTCCGGCCGGTCCGAGGCCGAGGAGACGGCGGCCGCGGAGGCCCGGAGGCGGGAAGCTGACCGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
tgttccc
- - - - - -ctaccac
- - - - - - - - - - - - - - -ttctccc