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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgttaatgtcaaaatgcagtttaattcaaatgaagaatatattgtaacagctttaatcaaatattaaatgatatgattgttatgttttctttttgtagGATTTGCTTCAGCATCAATGCAAAAG

Basic information

species Oryza sativa
transcript LOC_Os01g49310.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622013|gb|CB627024.1|CB627024
EST:     AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAG                         GATTTGCTTCAGCATCAATGCAAAAG
genomic: AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAGgtgagacttg ... ctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
EST: gi|218487953|gb|FG943628.1|FG943628
EST:     TGAAGCTCACCATGCATCAAAATCTACAGCAG                         GATTTGCTTCAGGGATCAATGCAAAAG
genomic: TGAAGCTCACCATGCATCAAAATCTACAGCAGgtgagacttg ... ctttttgtagGATTTGCTTCA-GCATCAATGCAAAAG
EST: gi|86891181|gb|CI305955.1|CI305955
EST:     AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAG                         GATTTGCTTCAGCATCAATGCAAAAG
genomic: AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAGgtgagacttg ... ctttttgtagGATTTGCTTCAGCATCAATGCAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacagctttaatcaaatattaaatgatatgattgttatgttttctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
                                    ttatgttttcttttt  CT-rich tract
        tttaatcaaatattaa  TA-rich tract