1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atactccacccctctattaactagtttcactgggcataattgttctttattgcattccacaaattaaatttcatttctaacaattgttttctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAGATTTTGTAAGAAGGTAGATTTAGAAGTTCTGCCAAGCAGAAGTGACGT
species | Oryza sativa |
transcript | LOC_Os01g49310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAAAAGTTCTGTCATGTCTTGCTGGCGACAAGTCTTCGGTGGAATTAG AATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAEST: gi|88324650|gb|CI568269.1|CI568269
genomic: GTGAAAAGTTCTGTCATGTCTTGCTGGCGACAAGTCTTCGGTGGAATTAGgcaagtagct ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
EST: GTGAAAAGTTCTGTCATGTCTTGCTGGCGACAAGTCTTCGGTGGAATTAG AATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
genomic: GTGAAAAGTTCTGTCATGTCTTGCTGGCGACAAGTCTTCGGTGGAATTAGgcaagtagct ... ctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACA
tttattgcattccacaaattaaatttcatttctaacaattgttttctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAGATTTTGTAAGAAGGTAGATTTAGAAGTTCTGCCAAGCAGAAGTGACGT
ttctaac putative branch site (score: 1)
ttgttttctttttgc putative PPT
aaattaaatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactccacccctctattaactagtttcactgggcataattgttctttattgcattccacaaattaaatttcatttctaacaattgttttctttttgcagAATCTTAAGCCAAATCTTTGAAGCCGATAATGCCAGAGTCTTCTACCAACAGATTTTGTAAGAAGGTAGATTTAGAAGTTCTGCCAAGCAGAAGTGACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -ctccacc
- - - - - - - - - - - - -ttcactg
- - - - - - - - - - - - - - - - - - - -ttgttct
- - - - - - - - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaat