1 5' 3' | 2 5' 3' |
...caacctcccaaccacctccaagtccatcatcaccaccactagcacctgcaacaatccccatgattaacgtcttgttttctttctctggtggtatgatcagGTCCGCCGTGGAGGAGCGATCAGGCGGCGGGTACAAGCGGTCGCCGGACAAGGCGCACAAGTCCGCCCTGGACGCGGCGCTGCACATGGATTCCAAGAAC
species | Oryza sativa |
transcript | LOC_Os01g48830.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ctgcaacaatccccatgattaacgtcttgttttctttctctggtggtatgatcagGTCCGCCGTGGAGGAGCGATCAGGCGGCGGGTACAAGCGGTCGCCGGACAAGGCGCACAAGTCCGCCCTGGACGCGGCGCTGCACATGGATTCCAAGAAC
gattaac putative branch site (score: 3)
atgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacctcccaaccacctccaagtccatcatcaccaccactagcacctgcaacaatccccatgattaacgtcttgttttctttctctggtggtatgatcagGTCCGCCGTGGAGGAGCGATCAGGCGGCGGGTACAAGCGGTCGCCGGACAAGGCGCACAAGTCCGCCCTGGACGCGGCGCTGCACATGGATTCCAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -cctccca
- - - - - - cacctcc
- - - - - - - - - - -gtccatc
- - - - - - - - - - - - - - - caccacc
- - - - - - - - - - - - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatt