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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaatctgaacttaagttaacttgacatctttgatctctgaatacttagtgatcggacttcgaacaagtccctgaagctgttcagacaaatcttttctagtactgaatttttatgggatagacaaagtactgaaattataggtggatgtgcagGTACTCGTGCGTGCACCTTCAGACATGCTCGCTGTGGATGTCATTTGGCGTGTATGTGACAGGGATTCTCTTCCAGACGGCTTCCTTCGTTTCGTTCATG

Basic information

species Oryza sativa
transcript LOC_Os01g48570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g48570.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G866432_T01 (Zea mays), 3'ss of exon 2
gtgagcaatctgaacttaagttaacttgacatctttgatctctgaatacttagtgatcggac---ttcgaacaagtccctgaagctgttcagacaaatcttttctagtactgaatttttatgggatagacaaagtactgaaattataggtggatgtgcagGTACTCGTGCGTGCACCTTCAGACATGCTCGCTGTGGATGTCATTTGGCGTGTATGTGACAGGGATTCTCTTCCAGACGGCTTCCTTCGTTTCGTTCATG
                                          |||  |||   || || |||    |||  |  | | ||    | |||    || | | |||         ||||             ||||    |||              |  |||||||||||||||||| || ||||| ||||||||||||||||| || |||| ||| ||| | ||| | |||||||||||||| |||||||| |  ||| ||
-----------------------------------------gtgagcactcgctgctctgacgccctcgcgcgcgcctctagctcagttt---cagacccttt---------aattcc----------gcaaaaccgtgatgccccgccgccccgcccagGTACTCGTGCGTGCAGCTCCAGACGTGCTCGCTGTGGATGTCGTTCGGCGCGTACGTGGCGGGGGTCCTCTTCCAGACGGCCTCCTTCGTCTGCTTCGTG

upper sequence: LOC_Os01g48570.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv09s0002g03950.t01 (Vitis vinifera), 3'ss of exon 2
gtgagcaatctgaacttaagttaacttgacatctttgatctctgaatacttagtgatcggacttcgaacaagtccctgaagctgttcagacaaatcttttctagtactgaatttttatgggatagacaaagtactgaaattataggtggatgtgcagGTACTCGTGCGTGCACCTTCAGACATGCTCGCTGTGGATGTCATTTGGCGTGTATGTGACAGGGATTCTCTTCCAGACGGCTTCCTTCGTTTCGTTCATG
                                  | | | | |   |    | | ||| || ||||| ||  | ||  ||          |||   |  | | | | | | | ||| |   ||   ||||| ||||   ||            ||||||| || ||| |  | ||||||| ||||||  |||||||||||||||| |||||||| || ||| | ||||| ||||| ||||| ||||| || ||| ||
----------------------------------tcgctgttttcgtttcaaattatccgagttcgatcatttaccgaaa----------caatcttaatattgcattaactgtttttcatattt-caaagcactggtctt------------gcagGTATTCATGCTTTAATCTTCAGATATGCTCAGTGTGGATGTCATTTGGGGTGTATGTAACTGGGGTGCTCTTTCAGACTGCTTCTTTCGTGTCTTTCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtactgaatttttatgggatagacaaagtactgaaattataggtggatgtgcagGTACTCGTGCGTGCACCTTCAGACATGCTCGCTGTGGATGTCATTTGGCGTGTATGTGACAGGGATTCTCTTCCAGACGGCTTCCTTCGTTTCGTTCATG
     tgaatttttat  TA-rich tract