1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gataaatcaattcagctcaataattatggcttgatagtccccacacaaagatggaattggcagttaacagttcctaatgcttttgtcctatgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCAT
species | Oryza sativa |
transcript | LOC_Os01g48440.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GCGTATTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTEST: gi|33676774|gb|CF305013.1|CF305013
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACEST: gi|29614630|gb|CB619643.1|CB619643
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagG-CGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGAC
EST: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAG GCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
genomic: GAAGAGAGAGCATACTCAGCTGACCTGTTTGAAGAAATGCGGAAAATAAGgtgacaaccc ... tgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGT
caaagatggaattggcagttaacagttcctaatgcttttgtcctatgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCAT
tcctaat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataaatcaattcagctcaataattatggcttgatagtccccacacaaagatggaattggcagttaacagttcctaatgcttttgtcctatgttctgcagGCGTTTTGGTACATGGCCAGTAGCAATACATGTTGGGACAAAGTACAGAGTGGTTCTAGAAGGCCCCGTTTGTAAGGGTAATCAAGTCACTGGATGGCAT
- -aaatcaa
- - - - - ttcagct
- - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - acaaaga