1 5' 3' | 2 5' 3' | 3 5' 3' |
...atatttttccttctggtttttgtaccaactgcaatgccatatggactttttcaccatcaaatgtgcttgatgattaatatatactttttgtatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACA
species | Oryza sativa |
transcript | LOC_Os01g48370.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG CAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGACGTGEST: gi|9866208|gb|AU101958.1|AU101958
genomic: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGgtaagtgtat ... tatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTG
EST: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG CAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGEST: gi|3762296|gb|C99544.1|C99544
genomic: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGgtaagtgtat ... tatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTG
EST: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG CAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGEST: gi|15008750|gb|AU223138.1|AU223138
genomic: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGgtaagtgtat ... tatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTG
EST: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG CAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGEST: gi|29663262|gb|CB659537.1|CB659537
genomic: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGgtaagtgtat ... tatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTG
EST: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATG CAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTG
genomic: GCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGgtaagtgtat ... tatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTG
ctttttcaccatcaaatgtgcttgatgattaatatatactttttgtatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACA
gattaat putative branch site (score: 36)
ctttttgt putative PPT
atgattaatatatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttttccttctggtttttgtaccaactgcaatgccatatggactttttcaccatcaaatgtgcttgatgattaatatatactttttgtatatgatagCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - ccttctg
- - - - - - - -gtttttg
- - - - - - - - - - - - - aactgca
- - - - - - - - - - - - - - - - - tgccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgatg