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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattacatttgcatctcttaactcattcgtgagagcagtggcagtgtggcactctaccatattaaccgtactgttctctttctgccgctgttaatttcagGAGTCGGCAAGGACGGCCTGATCCGGCACTTCTTCCACCGCCCGTCGAAGGCGTACACGACGGGGACGCGGAAGCGGCGGAAGGTGCACACCGACGAGCA

Basic information

species Oryza sativa
transcript LOC_Os01g48130.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g48130.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G058518_T01 (Zea mays), 3'ss of exon 2
--gattacatttg--catctcttaactcattcgtgagagcagtggcagtgtggcactctaccatattaaccgtactgttctctttctgccgctgttaatttcagGAGTCGGCAAGGACGGCCTGATCCGGCACTTCTTCCACCGCCCGTCGAAGGCGTACACGACGGGGACGCGGAAGCGGCGGAAGGTGCACACCGACGAGCA
   |  | |||    | | | || | |    | | | | | ||| |  | ||    || | | | || |   || | |        || |    | ||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| |||||| |||| || || ||||| || |||||||||||
acaaaaaaattaagtcgtttgttgattagcacataaaaac-gtgtct-tatgcacttccatctttttgat-atatt-tgaggacggtgtcttgatcaatttcagGTGTCGGTAAGGACGGCCTCATCCGACACTTCTTCCACCGTCCGTCTAAGGCTTACACGACCGGGACGAGGAAACGACGAAAGGTCCATACCGACGAGCA

upper sequence: LOC_Os01g48130.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT4G28500.1 (Arabidopsis thaliana), 3'ss of exon 2
gattacatttgcatctcttaactcattcgtgagagcagtggcagtgtggcactcta-ccatattaaccgtactgttctctttct-gccgctgttaattt---cagGAGTCGGCAAGGACGGCCTGATCCGGCACTTCTTCCACCGCCCGTCGAAGGCGTACACGACGGGGACGCGGAAGCGGCGGAAGGTGCACACCGACGAGCA
     |  | | |  | | |  |       || |     |  | |         ||   | |||||   |  ||    ||   | | || ||   |  |    ||||||   |||||||||   | | || || ||||||||||| ||||||||||| ||||||||||| ||  | ||||| || || || ||||| ||     |
-----cgatggaaattgtcatatagaaaaagaaaatgtagctaatccaatttcttaattaaattaagtttgatgaatgctaattagtcgttgaatacatatatagGAGTGAACAAGGACGGGACGGTGCGTCATTTCTTCCACCGACCGTCGAAGGCATACACGACGGGAACAAGAAAGCGACGTAAAGTCCACACTGATTCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggcactctaccatattaaccgtactgttctctttctgccgctgttaatttcagGAGTCGGCAAGGACGGCCTGATCCGGCACTTCTTCCACCGCCCGTCGAAGGCGTACACGACGGGGACGCGGAAGCGGCGGAAGGTGCACACCGACGAGCA
                                           tgttaattt  TA-rich tract