1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcatgttactgtgtgtacttattcatgtggcatttattccataaatagtatgaatatctattaattagattactaatatttatatgcgaatatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAG
species | Oryza sativa |
transcript | LOC_Os01g47490.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|33681993|gb|CF310232.1|CF310232
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|66915652|gb|CX102500.1|CX102500
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|428714|gb|D24866.1|D24866
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|286650|gb|D15457.1|D15457
genomic: AGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AACTCAAGAGCAGAGC-ATAG-AAGTNGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|88744902|gb|CI768262.1|CI768262
genomic: AACTCAAGAGCAGAGCGA-AGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|33693173|gb|CF321412.1|CF321412
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|33691810|gb|CF320049.1|CF320049
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|88585945|gb|CI703620.1|CI703620
genomic: AACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCA-CCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|33683325|gb|CF311564.1|CF311564
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: NNNCTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|58688945|gb|CK077632.1|CK077632
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|88410948|gb|CI581312.1|CI581312
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|428444|gb|D24594.1|D24594
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|33691809|gb|CF320048.1|CF320048
genomic: AGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCAEST: gi|88335397|gb|CI650362.1|CI650362
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCACGAGGACGCCAEST: gi|88736528|gb|CI760036.1|CI760036
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
EST: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAG GAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
genomic: AAACTCAAGAGCAGAGCGAAGCAAGTGGAATGCCCTCACCACAAGAAGAGgtactatctt ... atatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCA
atagtatgaatatctattaattagattactaatatttatatgcgaatatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAG
tactaat putative branch site (score: 36)
atgaatatctattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatgttactgtgtgtacttattcatgtggcatttattccataaatagtatgaatatctattaattagattactaatatttatatgcgaatatgttcagGAAGCAGCCATCAAGAAAAAATATGGTGGAATACTGCCCAAGAGGACGCCACATATAACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA