1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggaggctttgagtacataagaacaaaataattgtacttgattagctcgttacactcttacctgttgcactgaattcacataaattgttctcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGAAG
species | Oryza sativa |
transcript | LOC_Os01g46932.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGA GATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGEST: gi|58595047|gb|CF993355.1|CF993355
genomic: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGAgtaagattta ... tcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATG
EST: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGA GATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGEST: gi|88388300|gb|CI627839.1|CI627839
genomic: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGAgtaagattta ... tcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATG
EST: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGA GATCTCTTACCCATGAAGCAAAGGAAGTAT-CCTTGGCTGCEST: gi|38479088|gb|CF963221.1|CF963221
genomic: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGAgtaagattta ... tcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTG-CTGC
EST: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGA GATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGEST: gi|86485993|gb|CI128626.1|CI128626
genomic: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGAgtaagattta ... tcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATG
EST: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTGCAATCCAAAGATCGAGA GATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGEST: gi|88392856|gb|CI624087.1|CI624087
genomic: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGAgtaagattta ... tcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATG
EST: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATTCAAAGATCGAGA GATCTCTTACCCATGAAGCAAAGGAAGTATTCC
genomic: AATCTCCCTAGAAGAAGATTTCCCATTGTTCTCCAATCCAAAGATCGAGAgtaagattta ... tcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCC
ctcgttacactcttacctgttgcactgaattcacataaattgttctcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGAAG
ctcttac putative branch site (score: 32)
ttgttctcttctgc putative PPT
aattcacataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaggctttgagtacataagaacaaaataattgtacttgattagctcgttacactcttacctgttgcactgaattcacataaattgttctcttctgcagGATCTCTTAGCCATGAAGCAAAGGAAGTATTCCTTGCTGCTCTTGTTTATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
tggaggc
- - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacataa