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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagcacacctgttgttattttatcatctctagtggctaatgatgttgatatttactgttccgggagctaaccaacgggcaatgtgttcatgggtcacagGTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG

Basic information

species Oryza sativa
transcript LOC_Os01g45550.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58601059|gb|CK011587.1|CK011587
EST:     AACACTTACTCCAGCCTCCTCGGCCTCGCCTGGTCCCTCGTCGCCTTCCG                         GTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTC
genomic: AACACTTACTCCAGCCTCCTCGGCCTCGCCTGGTCCCTCGTCGCCTTCCGgtacgccgtt ... tgggtcacagGTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTC
EST: gi|86501615|gb|CI144248.1|CI144248
EST:     GACACTTACTCCAGCCTCCTCGGCCTCGCCTGGTCCCTCGTCGCCTTCCG                         GTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTC
genomic: AACACTTACTCCAGCCTCCTCGGCCTCGCCTGGTCCCTCGTCGCCTTCCGgtacgccgtt ... tgggtcacagGTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTC
EST: gi|58656945|gb|CK045625.1|CK045625
EST:     AACACTTACTCCAGCCTCCTCGGCCTCGCCTGGTCCCTCGTCGCCTTCCG                         GTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTC
genomic: AACACTTACTCCAGCCTCCTCGGCCTCGCCTGGTCCCTCGTCGCCTTCCGgtacgccgtt ... tgggtcacagGTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatatttactgttccgggagctaaccaacgggcaatgtgttcatgggtcacagGTGGCACGTCTCCATGCCAGCAATCGTCGAGAAGTCCATCTCCATTCTCTCGGACGCAGGCCTGGGGATGGCCATGTTTAGCCTGG
                    agctaac  putative branch site (score: 2)
     atttact  TA-rich tract