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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctggaatttcgtattttgttctatctctttatgaaatgacgttatggcacactttttctgcatattcttgatgaaaataattacctagtcatttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACGAATGCTTGTGCACAACCAATGAGAAGGGCTGGTGAGGGTGCTG

Basic information

species Oryza sativa
transcript LOC_Os01g44220.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88718649|gb|CI742159.1|CI742159
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|29680978|gb|CB677253.1|CB677253
EST:     ACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88959057|gb|CI685793.1|CI685793
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88695102|gb|CI739140.1|CI739140
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88587225|gb|CI704961.1|CI704961
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|1631746|gb|C19475.1|C19475
EST:     GGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88382690|gb|CI682579.1|CI682579
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88727392|gb|CI751047.1|CI751047
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88461692|gb|CI695535.1|CI695535
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88467402|gb|CI696785.1|CI696785
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88577596|gb|CI674194.1|CI674194
EST:     TACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGACTACCCATGCAACTCATGATGCCATTG
genomic: TACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88370002|gb|CI680684.1|CI680684
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88730612|gb|CI754225.1|CI754225
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88581823|gb|CI699034.1|CI699034
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88721115|gb|CI744414.1|CI744414
EST:     AGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|95101358|gb|CI693106.1|CI693106
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88378739|gb|CI681555.1|CI681555
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88592687|gb|CI710808.1|CI710808
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88321573|gb|CI672705.1|CI672705
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88582923|gb|CI699388.1|CI699388
EST:     ATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88586455|gb|CI704156.1|CI704156
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88578267|gb|CI687187.1|CI687187
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88442845|gb|CI694249.1|CI694249
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88313641|gb|CI671770.1|CI671770
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88696334|gb|CI739909.1|CI739909
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88721198|gb|CI744497.1|CI744497
EST:     GTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88369721|gb|CI680389.1|CI680389
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88386743|gb|CI682897.1|CI682897
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88582885|gb|CI700328.1|CI700328
EST:     AAGTACAGGCATTACATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88379094|gb|CI681927.1|CI681927
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88587959|gb|CI705743.1|CI705743
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88722100|gb|CI745427.1|CI745427
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88332311|gb|CI656180.1|CI656180
EST:     ACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         --G----TTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88719588|gb|CI743098.1|CI743098
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88731555|gb|CI755168.1|CI755168
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88436588|gb|CI691316.1|CI691316
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88355284|gb|CI678985.1|CI678985
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88721785|gb|CI745084.1|CI745084
EST:     AGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|95101434|gb|CI693182.1|CI693182
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88590896|gb|CI707792.1|CI707792
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88726134|gb|CI749789.1|CI749789
EST:     AAGTGCAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88591296|gb|CI708221.1|CI708221
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88468807|gb|CI696804.1|CI696804
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88310654|gb|CI672515.1|CI672515
EST:     ATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88581614|gb|CI698814.1|CI698814
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88578726|gb|CI687673.1|CI687673
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88424033|gb|CI689732.1|CI689732
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88310738|gb|CI672605.1|CI672605
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88432620|gb|CI690457.1|CI690457
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88584404|gb|CI701954.1|CI701954
EST:     AAGTACAGGCATTATATCCACAAGAACACTTGGGCAG                         TTGCAGGTTGGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88695626|gb|CI737664.1|CI737664
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88331522|gb|CI675859.1|CI675859
EST:     ACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88577151|gb|CI673709.1|CI673709
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88580165|gb|CI692165.1|CI692165
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88959416|gb|CI685897.1|CI685897
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88313443|gb|CI671561.1|CI671561
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88321531|gb|CI672660.1|CI672660
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88587937|gb|CI705720.1|CI705720
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88851990|gb|CI679548.1|CI679548
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88388472|gb|CI683249.1|CI683249
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88581775|gb|CI698981.1|CI698981
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88580407|gb|CI697335.1|CI697335
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88722816|gb|CI746326.1|CI746326
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88731649|gb|CI755262.1|CI755262
EST:     ATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88587570|gb|CI705326.1|CI705326
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88434668|gb|CI690949.1|CI690949
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88576805|gb|CI673331.1|CI673331
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88722803|gb|CI746313.1|CI746313
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88306534|gb|CI671286.1|CI671286
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|95101426|gb|CI693174.1|CI693174
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88394230|gb|CI684905.1|CI684905
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88587639|gb|CI704346.1|CI704346
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|95101252|gb|CI692993.1|CI692993
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88724277|gb|CI747536.1|CI747536
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88451782|gb|CI694552.1|CI694552
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88724785|gb|CI748044.1|CI748044
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88369747|gb|CI680418.1|CI680418
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88591618|gb|CI709663.1|CI709663
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|66922783|gb|CX109631.1|CX109631
EST:     TAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: TAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88580761|gb|CI697711.1|CI697711
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88359940|gb|CI679709.1|CI679709
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88726224|gb|CI749879.1|CI749879
EST:     AGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88361961|gb|CI682139.1|CI682139
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88334475|gb|CI676249.1|CI676249
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88583741|gb|CI701244.1|CI701244
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88579965|gb|CI691962.1|CI691962
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88586909|gb|CI704630.1|CI704630
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88728671|gb|CI752181.1|CI752181
EST:     TACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: TACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88404910|gb|CI685344.1|CI685344
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88371876|gb|CI681387.1|CI681387
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88590335|gb|CI709181.1|CI709181
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88463678|gb|CI696154.1|CI696154
EST:     AAGTACAGGCATTAGATCCACAAGAACACTT--G--G                         --GCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88590748|gb|CI707632.1|CI707632
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 57 (upstream exon), 75 (downstream exon)
Score: 106

TCACACAATTCATCTCTACCTCCTGACTCTTTATAAGGACCCCCAGCATCACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACGAATGCTTGTGCACAACCAATGAGAAGGGCTGGTGAGGGTGCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcacactttttctgcatattcttgatgaaaataattacctagtcatttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACGAATGCTTGTGCACAACCAATGAGAAGGGCTGGTGAGGGTGCTG
                    tcttgat  putative branch site (score: 106)
                                           tcattttttt  putative PPT
                atattcttgatgaaaa  TA-rich tract