1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagaattcagcacttaatataccgaataatttagtatgagttgagggttagtttggtcatcttctttttgatgattctccctgtttatgattgtgttgggatatattcttcatctcagGTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGACCGATTCGATTTTACGGGGTCTAGTTGACAAAAGAATGCAAGCTATGAAA
species | Oryza sativa |
transcript | LOC_Os01g43750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGAGCGTCTCCTGAAATGCATGCAGAAGATTGTCATTCCTGGTTACAT GTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGACEST: gi|428533|gb|D24685.1|D24685
genomic: ACTGAGCGTCTCCTGAAATGCATGCAGAAGATTGTCATTCCTGGTTACATgtgagaattc ... ttcatctcagGTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGAC
EST: ACTGAGCGTCTCCTGAAATGCATGCAGAAGATTGTCATTCCTGGTTACAT GTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGAC
genomic: ACTGAGCGTCTCCTGAAATGCATGCAGAAGATTGTCATTCCTGGTTACATgtgagaattc ... ttcatctcagGTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGAC
ctttttgatgattctccctgtttatgattgtgttgggatatattcttcatctcagGTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGACCGATTCGATTTTACGGGGTCTAGTTGACAAAAGAATGCAAGCTATGAAA
ttttgat putative branch site (score: 2)
ttcttcatctc putative PPT
atatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaattcagcacttaatataccgaataatttagtatgagttgagggttagtttggtcatcttctttttgatgattctccctgtttatgattgtgttgggatatattcttcatctcagGTCCTTGCCTACTAAAAACAACCGGAAGATGCATCAAATAAAGAAAGAGACCGATTCGATTTTACGGGGTCTAGTTGACAAAAGAATGCAAGCTATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT