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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacatctatatacatgtacaaaccttaatttcacccagttgttgtagcacatacatatatcgtagtataccatgttactgtgccatacaattgcatggcacgatggtgttcaagtactccaatttcaaaatgcaattcaattcgaattcgaatattgcagGAGCTACTACCGGTGCACGACGCCCAAGTGCGGTGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCCTCCACGGTGATCACCACGTACGAAGGGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g43650.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g43650.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AC198725.4_FGT009 (Zea mays), 3'ss of exon 2
gtacacatctatatacatgtacaaaccttaatttcacccagttgttgtagcacatacatatatcgta-gtataccatgttactgtgccatacaattgcatggcacgatggtgttcaagtactccaatttcaaaatgcaattcaattcgaattcgaatattgcagGAGCTACTACCGGTGCACGACGCCCAAGTGCGGTGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCCTCCACGGTGATCACCACGTACGAAGGGCAG
                                                | | |  ||  | |   |  ||||      |   ||| || ||||||  | || ||      | ||||| |   || || ||                | ||  |    || |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||| ||||||
------------------------------------------------atctctcaccaagagtatgtgtatgatgcatgtatgtaccttacaataacttgtcatacatatattcaaat---ccgatctccgg------------ccaaacgcatgcat-gcagGAGCTACTACCGGTGCACTACGCCCAAGTGCGGCGTGAAGAAGCGCGTGGAGCGGTCGTACCAGGACCCGTCGACGGTGATCACGACGTACGAGGGGCAG

upper sequence: LOC_Os01g43650.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G145554_T01 (Zea mays), 3'ss of exon 2
gtacacatctatatacatgtacaaaccttaatttcacccagttgttgtagcacatacatatatcgtagtataccatgttactgtgccatacaattgcatggcacga-tggtgttcaagtactccaatttcaaaatgcaattcaattcgaattcgaatattgcagGAGCTACTACCGGTGCACGACGCCCAAGTGCGGTGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCCTCCACGGTGATCACCACGTACGAAGGGCAG
                                                |||||| |  || | |  | |  |||    |||         | | ||||| | || | | || |  || | ||       ||| | |||  | |||    |  || ||   ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||| || |||
------------------------------------------------agcacacaagta-acc--aatgcacccaaatac---------ccaatgcatagtacaacttgtatgtaaattctatcccaccaaga-gcacataaatggccaaacgcat---gcagGAGCTACTACCGGTGCACGGCGCCCAAGTGCGGCGTGAAGAAGCGCGTGGAGCGGTCGTACCAGGACCCGTCGACGGTGGTCACCACGTACGAGGGACAG

upper sequence: LOC_Os01g43650.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA05G25770.1 (Glycine max), 3'ss of exon 2
gtacacatctatatacatgtacaaaccttaatttcacccagttgttgtagcacatacatatatcgtagtataccatgttactgtgccatacaattgcatggcacgatggtgttcaagt---actccaatttcaaaatgcaattcaattcgaattcgaatattgcagGAGCTACTACCGGTGCACGACGCCCAAGTGCGGTGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCCTCCACGGTGATCACCACGTACGAAGGGCAG
                                                                  | |        || ||  |     ||||    | | |  |  | |   ||||   |    || ||  | |    | | |    ||||   |||||||||||||||||||| ||||||| || |  ||||||   |||||||| || |||||| |||| |  ||||||||  |||| ||||| || ||||| ||||| |||
-----------------------------------------------------------------caatggcttcaatttcttggtttagcaatattgtagtagtaatg-gccaaagtgaaaaatgaagtttgatagctgaataagggtgaatgataatattgcagGAGCTACTACAGGTGCACAACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttcaagtactccaatttcaaaatgcaattcaattcgaattcgaatattgcagGAGCTACTACCGGTGCACGACGCCCAAGTGCGGTGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCCTCCACGGTGATCACCACGTACGAAGGGCAG
               aatttcaaaat  TA-rich tract