1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attctgtgagagtgtattggattaaattcagttttcctatgcaatttgatccagtattattttggttcttatacatctcactttctcctctaccctctagATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTGCAACTTATGTTGTTGAAGGGGGGATGACCAACACTTACACAAATATAA
species | Oryza sativa |
transcript | LOC_Os01g43390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGAAGCTCCGGTTCGTCGGTGAGTCGCTCAAGATTCTACGCACTGAG ATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|58695847|gb|CK084534.1|CK084534
genomic: TCGAGAAGCTCCGGTTCGTCGGTGAGTCGCTCAAGATTCTACGCACTGAGgtaatgcgca ... taccctctagATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: CGAGAAGCTCCGGTTCGTCGTGTGAGTCGCTCAAGATTCTACGCACTGAG ATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|58594749|gb|CF993057.1|CF993057
genomic: CGAGAAGCTCCGGTTCGTCG-GTGAGTCGCTCAAGATTCTACGCACTGAGgtaatgcgca ... taccctctagATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TCGAGAAGCTCCGGTTCGTCGGTGAGTCGCTCAAGATTCTACGCACTGAG ATTGGGGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
genomic: TCGAGAAGCTCCGGTTCGTCGGTGAGTCGCTCAAGATTCTACGCACTGAGgtaatgcgca ... taccctctagATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
ttgatccagtattattttggttcttatacatctcactttctcctctaccctctagATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTGCAACTTATGTTGTTGAAGGGGGGATGACCAACACTTACACAAATATAA
atctcac putative branch site (score: 3)
tacatctcactttctc CT-rich tract
agtattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctgtgagagtgtattggattaaattcagttttcctatgcaatttgatccagtattattttggttcttatacatctcactttctcctctaccctctagATTGATGGACAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTGCAACTTATGTTGTTGAAGGGGGGATGACCAACACTTACACAAATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG