1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttctttcagaaaagaaaacgttttatttcatgctgtactgcattccttgttattttctttatatggaaatggcagtcaaactcaaattttcctttgacagATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAAT
species | Oryza sativa |
transcript | LOC_Os01g43250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAG ATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTEST: gi|29658631|gb|CB654906.1|CB654906
genomic: TTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGgttagttgtt ... cctttgacagATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATT
EST: TTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAG ATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTEST: gi|88739832|gb|CI761342.1|CI761342
genomic: TTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGgttagttgtt ... cctttgacagATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATT
EST: TTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAG ATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATT
genomic: TTGTGTTTGTGCTGATGGGACGCTATCTTTGTGGGAGGAGGTCAGTGAAGgttagttgtt ... cctttgacagATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATT
cttgttattttctttatatggaaatggcagtcaaactcaaattttcctttgacagATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAAT
ttttccttt CT-rich tract
tattttctttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttcagaaaagaaaacgttttatttcatgctgtactgcattccttgttattttctttatatggaaatggcagtcaaactcaaattttcctttgacagATGATCAACTTCCAACCTGGAGGAAATGTAAAGTATTTGAGAGTGGCAATTCTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAAT
- - - - - -aagaaaa
- - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcaaa