1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtctggtcggggcccttcccttccttcatcgttcgtggtttcttgtggttggattggatgatgatgagctaaccccatcgccttcggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGT
species | Oryza sativa |
transcript | LOC_Os01g43090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|58689204|gb|CK077891.1|CK077891
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|88447787|gb|CI576983.1|CI576983
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|29638513|gb|CB643522.1|CB643522
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|88353692|gb|CI633083.1|CI633083
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGAAGTCTACGGCCCCCTCGCAAACGAGATCCTCCTCGGCAAG GCGCTGAACCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACAAAGTTCGGGEST: gi|88313245|gb|CI594875.1|CI594875
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|88301464|gb|CI597157.1|CI597157
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: GCACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGAGGGAGCAGGTGCAGGTGGCCAACAAGTTCGGGEST: gi|88410056|gb|CI573295.1|CI573295
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|25798009|gb|CA753970.1|CA753970
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|88370552|gb|CI590130.1|CI590130
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTATACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|29682107|gb|CB678382.1|CB678382
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGEST: gi|88359539|gb|CI621070.1|CI621070
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
EST: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAG GCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
genomic: ACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGgtctggtcgg ... ggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGG
tcttgtggttggattggatgatgatgagctaaccccatcgccttcggatttccagGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGT
agctaac putative branch site (score: 28)
tttcc putative PPT