1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctgtgatttcccctgctcttgcataatgcatttagcctatttggtcttcatctgcaagtcttatgttctgtcgttgtaataatttgatttcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTTGCTCTTTCTGTTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAAT
species | Oryza sativa |
transcript | LOC_Os01g42950.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAG ACGGTCTTTATAACTTCGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTTEST: gi|33678979|gb|CF307218.1|CF307218
genomic: CTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttgaatgca ... tcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTT
EST: ACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAG ACGGTCTTTATAACTTTGAATGGATCTTGGAAACT
genomic: ACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttgaatgca ... tcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACT
tcttcatctgcaagtcttatgttctgtcgttgtaataatttgatttcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTTGCTCTTTCTGTTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAAT
atttgat putative branch site (score: 13)
tttcttttgc CT-rich tract
ttgtaataatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtgatttcccctgctcttgcataatgcatttagcctatttggtcttcatctgcaagtcttatgttctgtcgttgtaataatttgatttcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTTGCTCTTTCTGTTGACCAAGCCACAGGCAGTTTGACATCAACACAGCAAT
- tgtgatt
- - - - - - cctgctc
- - - - - - - - - -ttgcata
- - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg