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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggccgtcctttgcggagatttccttgacctttggtcacgcccctttgaattgctgtgctgctgtgaccatgctgctatggatgtttgttgatttttttttaaacatgttttcagGGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAATGCGTCCTTGCGTTTGGCTTATCGTTGGCCACTGGGATTTCCGCACGGT

Basic information

species Oryza sativa
transcript LOC_Os01g42720.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88904139|gb|CI001872.1|CI001872
EST:     GACCCGGTGTTCGTCAACCCGTGCCTCTGCCCTACCTGTGACGGGACTAG                         GGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAA
genomic: GACCCGGTGTTCGTCAACCCGTGCCTCTGCCCTACCTGTGACGGGACTAGgttggccgtc ... atgttttcagGGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAA
EST: gi|87029992|gb|CI268005.1|CI268005
EST:     GACCCGGTGTTCGTCAACCCGTGCCTCTGCCCTACCTGTGACGGGACTAG                         GGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAA
genomic: GACCCGGTGTTCGTCAACCCGTGCCTCTGCCCTACCTGTGACGGGACTAGgttggccgtc ... atgttttcagGGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtgaccatgctgctatggatgtttgttgatttttttttaaacatgttttcagGGTGCAGCGCTGCTTGAACTGCCTTGGAAAAGGCTACGCTTGAAGGGGCAATGCGTCCTTGCGTTTGGCTTATCGTTGGCCACTGGGATTTCCGCACGGT
                          tgttgat  putative branch site (score: 4)
                                              tgttttc  putative PPT
                        tttgttgatttttttt  TA-rich tract