1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatggcatagtttttccccttatgtggcttaatcttacaagttatgtggccttgtagaccttgttttacaatactgctttattgcgcttgtttctgcagGAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAATTCCATCTCCGTGTCGAATGTCTGGAGGACAACCTGTGTCGCAAGATGATGTTTCGAT
species | Oryza sativa |
transcript | LOC_Os01g42500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCAGCAGTTCGTGCATCGCTACTGCCTTGATCATTGGAGGTCTGTTAAG GAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAGTTCCATCTCEST: gi|218504674|gb|FG959566.1|FG959566
genomic: CGCAGCAGTTCGTGCATCGCTACTGCCTTGATCATTGGAGGTCTGTTAAGgtaaagtgcc ... gtttctgcagGAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAATTCCATCTC
EST: GCAGCAGTTCGTGCATCGCTACTGCCTTGATCATTGGAGGTCTGTTCAAG GAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAGTTCCATCT
genomic: GCAGCAGTTCGTGCATCGCTACTGCCTTGATCATTGGAGGTCTGTT-AAGgtaaagtgcc ... gtttctgcagGAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAATTCCATCT
tgtggccttgtagaccttgttttacaatactgctttattgcgcttgtttctgcagGAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAATTCCATCTCCGTGTCGAATGTCTGGAGGACAACCTGTGTCGCAAGATGATGTTTCGAT
cttgtttct CT-rich tract
ttttacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatggcatagtttttccccttatgtggcttaatcttacaagttatgtggccttgtagaccttgttttacaatactgctttattgcgcttgtttctgcagGAAGGAACTGCCTTTTCTCACTGCACAACATGTAAGGCACAATTCCATCTCCGTGTCGAATGTCTGGAGGACAACCTGTGTCGCAAGATGATGTTTCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -tggcata
- - - - - - - - - - - - - - - - - - - - - - -tgtggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttt