1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatactgacactagaataaacccacttcccaagtcgtcgtagtgttaaagaaaaggtggaattatagaatttaagttattgacacaataaaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTC
species | Oryza sativa |
transcript | LOC_Os01g41010.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAG TGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCEST: gi|58598807|gb|CK009335.1|CK009335
genomic: C-T-TTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGgtgagaatgg ... aaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCC
EST: CTTGTTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAG TGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCC
genomic: C-T-TTGATGAGGGAGCTGCTGATTGTGAGTCAAGAACAGTTGTGAAGAGgtgagaatgg ... aaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCC
ttaaagaaaaggtggaattatagaatttaagttattgacacaataaaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTC
tattgac putative branch site (score: 31)
aattatagaatttaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatactgacactagaataaacccacttcccaagtcgtcgtagtgttaaagaaaaggtggaattatagaatttaagttattgacacaataaaatctgcagTGAGAAGAAAGCTAGAGAAGATCAAATGGCAGCTGAATCCTCCCTGGTTCCACAAACCTCCTCTGAATCGATTGCGCAGAAGATGGGCTTCTTCAGGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-gatactg
- - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaata