1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttagaggaatgctcgtcttttaatcgcgcgggatttcccttattgctctcaaatgcacattctctactcctagctctaacagctcctcaatatttaccagGTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATTGACATGGCTGTCAGCGAAGGATTCATAGCGGAGGATGCGCGGCGCATTA
species | Oryza sativa |
transcript | LOC_Os01g40630.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCG GTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATTEST: gi|29641391|gb|CB646398.1|CB646398
genomic: AGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCGgtaagtaacc ... tatttaccagGTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATT
EST: AGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCG GTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATTEST: gi|29675216|gb|CB671491.1|CB671491
genomic: AGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCGgtaagtaacc ... tatttaccagGTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATT
EST: AGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCG GTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATT
genomic: AGTTGCTTGAGGTCATCACCTGGGCCCAACTAGGAATCCACAAGAAGCCGgtaagtaacc ... tatttaccagGTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATT
ctctcaaatgcacattctctactcctagctctaacagctcctcaatatttaccagGTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATTGACATGGCTGTCAGCGAAGGATTCATAGCGGAGGATGCGCGGCGCATTA
ctctaac putative branch site (score: 2)
tcaatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagaggaatgctcgtcttttaatcgcgcgggatttcccttattgctctcaaatgcacattctctactcctagctctaacagctcctcaatatttaccagGTTGGCCTTCTGAATGTCGACGGGTTTTATGATCCTTTTCTATCCTTCATTGACATGGCTGTCAGCGAAGGATTCATAGCGGAGGATGCGCGGCGCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG