1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gagaaagcaagcctgcttgttcttactacacctgtttgaccgcttttgtgctaaaaactgatgtgcttttctgtttcctctctctttgtgttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
species | Oryza sativa |
transcript | LOC_Os01g40630.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGG GGTCATCCCGAAATCCTTGATGCCCAGAGAGEST: gi|25798342|gb|CA754303.1|CA754303
genomic: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGGgtgagtgatc ... ttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
EST: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGG GGTCATCCCGAAATCCTTGATGCCCAGAGAGEST: gi|29675215|gb|CB671490.1|CB671490
genomic: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGGgtgagtgatc ... ttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
EST: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGG GGTCATCCCGAAATCCTTGATGCCCAGAGAG
genomic: ATGGGCCTCGTCTCCCACGCTGTTCACGACGGTGGTCGCCATGTCATTGGgtgagtgatc ... ttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
ttgtgctaaaaactgatgtgcttttctgtttcctctctctttgtgttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
tgtgcttttctgtttc CT-rich tract
taaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaaagcaagcctgcttgttcttactacacctgtttgaccgcttttgtgctaaaaactgatgtgcttttctgtttcctctctctttgtgttcttggcagGGTCATCCCGAAATCCTTGATGCCCAGAGAG
- -aaagcaa
- - - - - -cctgctt
- - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac