Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtgaatcaaatatcactcctctctgcatggctttattttttttacgcactgagaagcagaattttcttattttttctttgtttttttttccccacagGCGATGGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGT

Basic information

species Oryza sativa
transcript LOC_Os01g39810.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G164175_T02 (Zea mays), 3'ss of exon 4
---tatgtgaatcaaatatcactcctctctgc---atggctttattttttttacgcactgagaagcagaattttcttattttttctttgtttttttttccccacagGCGATGGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGT
   ||  |  |||    ||| |||  | | ||   |  |||| ||  |||| |    || || |   | |||| ||||  | ||     | | | ||| ||  |||| |||||||||||||||  | |||||  | |||||| ||||||| ||||| ||| ||||||||||||| ||||| |||||||||  ||| |||||  |||
caatacattcatcct-catccctctacccagctagacagcttcatccttttcatttcctaaggaagggcatttccttagctgtt-----tctctattttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGT

upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G000937_T01 (Zea mays), 3'ss of exon 3
tatgtgaatcaaatatcactcctct-ctgcatggctttattttttttacgcactgagaagca--gaattttcttattttttctttgtttttttttccccacagGCGATGGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGT
    |||  |  || || || | |  ||     |||| ||  |||| |    |       ||  ||      ||   ||  || | | | | ||| ||  |||| |||||||||||||||  | |||||  | |||||| ||||||| ||||| ||| ||||||||||||| ||||| |||||||||  ||| |||||  |||
---ttgatcctcatctctctacccagctagtcagcttcatccttttcattttccattttccaaggaggggcatttccttagctgtttctctattttcctgcagGTGATGGCTCCACGTCTCGTGCAATCTTTGTTTGCAGCTTTTGGAGATCTATACCTATATAAACTTTCCAAACTTATTTTCAATGGTCAAGTTGCTAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgcactgagaagcagaattttcttattttttctttgtttttttttccccacagGCGATGGCTCCACGTCTTCTACAATCAGTCTTTGCATCTTTTGGGGATCTCTACTTATATAAACTTTCAAAACTCATTTTCAATAATCACGTTGCCCAGT
                   ttttcttattttttct  CT-rich tract
               agaattttcttatttt  TA-rich tract