Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctattaactagagaaataaaataattcttatgaaaaagaaccaaaatttttatcctttctctccttcatcttattcaccacctggttaatcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAGAAAATGGTGTTCCACAAAGGTTTATACTGGGACAAG

Basic information

species Oryza sativa
transcript LOC_Os01g38359.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638603|gb|CB643612.1|CB643612
EST:     GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAG                         TTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAG
genomic: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacat ... tcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAG
EST: gi|88312265|gb|CI582603.1|CI582603
EST:     GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGGGTCGAGGCCCAAG                         TTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAG
genomic: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacat ... tcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAG
EST: gi|8859057|gb|AU096375.1|AU096375
EST:     GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAG                         NTCACTTCATTNGAGAACAACTTTACGGTACCGAGTTCGTTT
genomic: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacat ... tcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttttatcctttctctccttcatcttattcaccacctggttaatcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAGAAAATGGTGTTCCACAAAGGTTTATACTGGGACAAG
                                       ggttaat  putative branch site (score: 4)
                       atcttatt  TA-rich tract