1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaaaaaaatctggctccttgggtgtttgtactactgtaaccatacttttctcaaaaacgagccacactccaatgaaataaaactaaatgctgcttatagAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCCTCCAGAATTAGCAGGCACCAAGTCTCG
species | Oryza sativa |
transcript | LOC_Os01g38180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAG AGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGEST: gi|88294584|gb|CI602304.1|CI602304
genomic: TGCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGgtataactgt ... ctgcttatagAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGG
EST: TGCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAG AGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGG
genomic: TGCATCCACCAGAGAAGATGGTGTGCCTCTGACTTTTATATTAGGACAAGgtataactgt ... ctgcttatagAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGG
cttttctcaaaaacgagccacactccaatgaaataaaactaaatgctgcttatagAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCCTCCAGAATTAGCAGGCACCAAGTCTCG
aactaaa putative branch site (score: 2)
aatgaaataaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaaaaatctggctccttgggtgtttgtactactgtaaccatacttttctcaaaaacgagccacactccaatgaaataaaactaaatgctgcttatagAGAATGTGATGCGAGGCTTCAGTATGGCTGTTAGCTCAATGCAAGCAGGGGAGAAAGCTGTGTTCACCATCCCTCCAGAATTAGCAGGCACCAAGTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-caaaaaa
- - - - - - ggctcct
- - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa