1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtgtgagttgaagaagagattacgttgtggtactaggtagctatatgtatgcgtagtcatgtatgttgcagcatttagaatgccacttctctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGA
species | Oryza sativa |
transcript | LOC_Os01g37980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAAGCACTG ATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAAGGCTEST: gi|88325721|gb|CI648165.1|CI648165
genomic: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGgtgaggggaa ... tctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
EST: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTG ATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTEST: gi|2312105|gb|C28260.1|C28260
genomic: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGgtgaggggaa ... tctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
EST: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTG ATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTEST: gi|88362883|gb|CI614239.1|CI614239
genomic: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGgtgaggggaa ... tctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
EST: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTG ATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTEST: gi|88357938|gb|CI650674.1|CI650674
genomic: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGgtgaggggaa ... tctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
EST: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTG ATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTEST: gi|88574541|gb|CI666310.1|CI666310
genomic: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGgtgaggggaa ... tctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
EST: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTG ATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
genomic: AGCAGAAGGCGTCGGAGATCAAGTCTGGCATCGATGGGGCCGAGGCACTGgtgaggggaa ... tctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCT
atgtatgcgtagtcatgtatgttgcagcatttagaatgccacttctctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGA
ccacttctct CT-rich tract
atttagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgagttgaagaagagattacgttgtggtactaggtagctatatgtatgcgtagtcatgtatgttgcagcatttagaatgccacttctctgttacagATAAAGAAGATGGATCTTGAAGCAAGGAACCAACAGCCAAGTGTGAGGGCTGGGCTGCTGGCAAAACTGAGGGAGTACAAGTCAGATCTTAACAACCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - gaagaaga
- - - - - - - - - - - - - - tggtact
- - - - - - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgc