1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaattaacttcatatataattccactctacaccatcaatataatgcatgcatgatatcttcacgtacgaataatataatgtatgcatgatatctttatgaacgaataatgtatatgtgtggcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAAACATGGAATCAGAATGGCGAAAAGTGCCCTGACAATACTA
species | Oryza sativa |
transcript | LOC_Os01g37000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCAEST: gi|58612594|gb|CK040306.1|CK040306
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCAEST: gi|88352833|gb|CI678859.1|CI678859
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGAACTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAANACGTTCCEST: gi|58611754|gb|CK039466.1|CK039466
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGT-CC
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAEST: gi|33654001|gb|CF276615.1|CF276615
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGA
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCAEST: gi|88429320|gb|CI690221.1|CI690221
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
EST: CAATCANAC-TGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCAEST: gi|88738709|gb|CI762217.1|CI762217
genomic: CAATCA-ACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCAEST: gi|88425735|gb|CI689388.1|CI689388
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
EST: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAG ATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
genomic: CCAATCAACCTGCATTCGACCATCCTCTTCTCAAGGACCATACAATCCAGgtgaattaac ... gcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCA
taatgtatgcatgatatctttatgaacgaataatgtatatgtgtggcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAAACATGGAATCAGAATGGCGAAAAGTGCCCTGACAATACTA
aataatgtatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattaacttcatatataattccactctacaccatcaatataatgcatgcatgatatcttcacgtacgaataatataatgtatgcatgatatctttatgaacgaataatgtatatgtgtggcggtttcagATGCGACCTTCTATCCAGCCAAGTGGCCTATATGGAGAAGCAACACGTCCATTCACCCAAACATGGAATCAGAATGGCGAAAAGTGCCCTGACAATACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA