1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatttctagcaactctgataatttttactactcgctaattacgagtttattattttgtgaattattgcctaattacatacttatttctttttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG
species | Oryza sativa |
transcript | LOC_Os01g36950.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGTTTTGGCGGAACAAACATCGATCCGACGGCGTTGGAGGACAAGEST: gi|33684836|gb|CF313075.1|CF313075
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CTTCTTTCCTCTACAANTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29675526|gb|CB671801.1|CB671801
genomic: CCTC-TTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAAGTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|313080398|gb|HO213406.1|HO213406
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|86599861|gb|CI256023.1|CI256023
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: AACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|88847460|gb|CI015953.1|CI015953
genomic: AACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|88829644|gb|CI074514.1|CI074514
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|313080399|gb|HO213407.1|HO213407
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|86498989|gb|CI141622.1|CI141622
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: GGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29680788|gb|CB677063.1|CB677063
genomic: GGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: ACAANTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29681137|gb|CB677412.1|CB677412
genomic: ACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29658386|gb|CB654661.1|CB654661
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29657456|gb|CB653731.1|CB653731
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTTTACAACTACTCCACCCACCAGCTCCACGGCATCTTTGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29658418|gb|CB654693.1|CB654693
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: AACTACTCCACCCACCAGCTCCACGGCATCTTTGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|9884513|gb|BE607346.1|BE607346
genomic: AACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29657554|gb|CB653829.1|CB653829
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAAATACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29682521|gb|CB678796.1|CB678796
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|86538667|gb|CI178873.1|CI178873
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: AGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29671749|gb|CB668024.1|CB668024
genomic: AGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTTTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29682522|gb|CB678797.1|CB678797
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAAATACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|29668873|gb|CB665148.1|CB665148
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGEST: gi|87030339|gb|CI252616.1|CI252616
genomic: CCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
EST: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAG GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
genomic: CCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGgtaataattt ... tttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAG
gtttattattttgtgaattattgcctaattacatacttatttctttttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG
gcctaat putative branch site (score: 3)
cttatttctttttcat putative PPT
taattacatacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttctagcaactctgataatttttactactcgctaattacgagtttattattttgtgaattattgcctaattacatacttatttctttttcattcagGCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT