1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagccatgttctatcagtcttatattatgctcaggtaatatatccctgttgatctcatgtttctgcggcatacttgttttccatgataaccgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTGGTGGCGATTCTACTGCAACTGGGGACTCAAGTTCAACACGAGTTGCTG
species | Oryza sativa |
transcript | LOC_Os01g34620.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|218483000|gb|FG956128.1|FG956128
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|218489064|gb|FG948407.1|FG948407
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCTTCATCAGGGGTCTCGTGAGATCGAGCTGCGCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|38482485|gb|CF966520.1|CF966520
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCTTCATCAGGGGTCTCGTGAGATCGAGCTGCGCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTGGGGAACTACTCATCAGGACTTEST: gi|38478580|gb|CF962713.1|CF962713
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCTTCATCAGGGGTCTCGTGAGATCGAGCTGCGCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCGCATCAGTTTAGGAACTACTCATCAGGACTEST: gi|33680954|gb|CF309193.1|CF309193
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATC-CATCAGTTTAGGAACTACTCATCAGGACT
EST: CCTTTTTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTATCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|58590633|gb|CF988941.1|CF988941
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCTTCATCAGGGGTCTCGTGAGATCGAGCTGCGCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|218505071|gb|FG947171.1|FG947171
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCTTCATCAGGGGTCTCGTGAGATCGAGCTGCGCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|58693371|gb|CK082058.1|CK082058
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCTTCATCAGGGGTCTCGTGAGATCGAGCTGCGCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|86901749|gb|CI310511.1|CI310511
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|88427128|gb|CI586676.1|CI586676
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|33662134|gb|CF293101.1|CF293101
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|33808808|gb|CF330289.1|CF330289
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTEST: gi|66921894|gb|CX108742.1|CX108742
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGGAAGCTACTCEST: gi|88316503|gb|CI622749.1|CI622749
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGG-AA-CTACTC
EST: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCT GCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
genomic: CCGCCCTCATCAGGGGTCTCGTGAGATCGAGCTGCTCGCCGACCGTAGCTgtaaggctct ... cgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTT
ctgttgatctcatgtttctgcggcatacttgttttccatgataaccgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTGGTGGCGATTCTACTGCAACTGGGGACTCAAGTTCAACACGAGTTGCTG
tgataac putative branch site (score: 2)
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagccatgttctatcagtcttatattatgctcaggtaatatatccctgttgatctcatgtttctgcggcatacttgttttccatgataaccgggagatagGCTGTGGCCCAACCAACTATCCATCAGTTTAGGAACTACTCATCAGGACTTGGTGGCGATTCTACTGCAACTGGGGACTCAAGTTCAACACGAGTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG