1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgttgactgaagtttcataagtaaacagtattatcttgttttcttctatatatttacatttttcacgctgatttactccttgttttttaaaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCTGCAAGAAAGCTTCCATTAGAAGAGTTATCGTGACATCATCCATGGCTG
species | Oryza sativa |
transcript | LOC_Os01g34480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCEST: gi|29616459|gb|CB621471.1|CB621471
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCEST: gi|117221000|gb|CT845506.1|CT845506
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCEST: gi|11026105|gb|AU162706.1|AU162706
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCEST: gi|58610521|gb|CK038233.1|CK038233
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCEST: gi|84117052|gb|CD150819.1|CD150819
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG GCTGAGTTACTTGACCCCGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
tctatatatttacatttttcacgctgatttactccttgttttttaaaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCTGCAAGAAAGCTTCCATTAGAAGAGTTATCGTGACATCATCCATGGCTG
cgctgat putative branch site (score: 4)
ttgttttttaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttgactgaagtttcataagtaaacagtattatcttgttttcttctatatatttacatttttcacgctgatttactccttgttttttaaaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCCTGCAAGAAAGCTTCCATTAGAAGAGTTATCGTGACATCATCCATGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
atgttga
- - - - - - - - - -aagtaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgctg