1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaaagctaaatcttatgttttccatgacaatctgtattgcatatttagttagaaacttagaagaaaagtaatatatgttatcaattaatgccatttcagTTATTGGAAGAAATCAAAGTTGCAGTTCAGAAGCTCGATAATCCTGAATTCCCTGATGGACAACCTTCTCAT
species | Oryza sativa |
transcript | LOC_Os01g33869.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ttagttagaaacttagaagaaaagtaatatatgttatcaattaatgccatttcagTTATTGGAAGAAATCAAAGTTGCAGTTCAGAAGCTCGATAATCCTGAATTCCCTGATGGACAACCTTCTCAT
aattaat putative branch site (score: 3)
ccatttc CT-rich tract
aagaaaagtaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaagctaaatcttatgttttccatgacaatctgtattgcatatttagttagaaacttagaagaaaagtaatatatgttatcaattaatgccatttcagTTATTGGAAGAAATCAAAGTTGCAGTTCAGAAGCTCGATAATCCTGAATTCCCTGATGGACAACCTTCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - agctaaa
- - - - - - -ttatgtt
- - - - - - - - - - - ccatgac
- - - - - - - - - - - - - - - - - - -ttgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa