Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcttgttctattttcgttcagtattaagtagagagcacattttctatgctgtgaaccactttctatgctgtgaaccacatctgaatcgtttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGACCGGAATGTCACTGCACAAACTCTTAAGGCTATCCCTCTTATTACAAAGA

Basic information

species Oryza sativa
transcript LOC_Os01g33050.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g33050.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA11G19410.2 (Glycine max), 3'ss of exon 1
--gtatttgcttgttctattttcgttcagtattaagtagagagcacattttctatgctgtgaaccactttctatgctg--tgaaccacatctgaatcgtttgaaat--cagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGACCGGAATGTCACTGCACAAACTCTTAAGGCTATCCCTCTTATTACAAAGA
    ||    |   | | ||| | ||         ||      ||  | || | | ||     |    ||    |  |  | | |   ||   | |    ||   |  |||||||| ||||||||||||||||| ||| | ||||| |||||| | |||||| ||||| |  |||   |    || ||||| || ||    |||   || |
gtaaatcaattaactttgtttccctttctgtcagggtcttatacatgtgttgtttactactgtcttggtttggagaagcttcagcattattacatttacatgctgtttcagGACTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAA

upper sequence: LOC_Os01g33050.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA12G09090.1 (Glycine max), 3'ss of exon 3
gtatttgcttgttctattttcgttcagtattaagtagagagcacattttctatgctgtgaaccactttctatgctgtgaaccacatctgaatcgtt----tgaaat-------cagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGACCGGAATGTCACTGCACAAACTCTTAAGGCTATCCCTCTTATTACAAAGA
    |   |     ||  || |||     ||  ||   |  |  ||    | || |||  || ||| |||  | |  ||    | || | ||  ||    | | ||       |||||||| ||||||||||||||||| ||| | |||||||| ||| | |||||| ||||| |  |||   |    || ||||| || ||    |||   || |
---gtaaatgaaattaactttgtttgcctttctgtcatggtcttataca-tgtgttgtttactactgtcttggtttggagaagcttcagcattattatatttacatgctgtttcagGACTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGACCTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87011835|gb|CI283722.1|CI283722
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|163922774|gb|EG714200.1|EG714200
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88211308|gb|CI210948.1|CI210948
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGAAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|7332432|gb|AU085778.1|AU085778
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88211757|gb|CI211397.1|CI211397
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|29623609|gb|CB628620.1|CB628620
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|10930713|gb|AU160987.1|AU160987
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|2311654|gb|C27809.1|C27809
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|570064|gb|D40913.1|D40913
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|29623610|gb|CB628621.1|CB628621
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88211049|gb|CI212482.1|CI212482
EST:     TGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|112786041|gb|EE591935.1|EE591935
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88207577|gb|CI207426.1|CI207426
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88519409|gb|CI447063.1|CI447063
EST:     ATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAAGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: ATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|86846996|gb|CI283111.1|CI283111
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88204566|gb|CI204415.1|CI204415
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|66922755|gb|CX109603.1|CX109603
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAN                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|33655746|gb|CF278360.1|CF278360
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACTTGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88533740|gb|CI460401.1|CI460401
EST:     GGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: GGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|86429814|gb|CI082237.1|CI082237
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88575427|gb|CI669572.1|CI669572
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAAGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|87013684|gb|CI269183.1|CI269183
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|86898729|gb|CI296052.1|CI296052
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88305091|gb|CI652025.1|CI652025
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|86529842|gb|CI170048.1|CI170048
EST:     TGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88506783|gb|CI434289.1|CI434289
EST:     GATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAAGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: GATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|218494325|gb|FG952804.1|FG952804
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAG
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAG
EST: gi|86496271|gb|CI138904.1|CI138904
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88212040|gb|CI211680.1|CI211680
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|218478137|gb|FG953400.1|FG953400
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|87012006|gb|CI283893.1|CI283893
EST:     CAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: CAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|109711930|gb|CI029100.1|CI029100
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|86531584|gb|CI171790.1|CI171790
EST:     TAAATGGACATAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|86601348|gb|CI251722.1|CI251722
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|27546707|gb|CA764976.2|CA764976
EST:     GACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCCGAGCGCTATGAC
genomic: GACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|88289503|gb|CI555865.1|CI555865
EST:     GGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: GGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|33677090|gb|CF305329.1|CF305329
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAATTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|33659897|gb|CF290864.1|CF290864
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|218494965|gb|FG965712.1|FG965712
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
EST: gi|8859884|gb|AU097202.1|AU097202
EST:     TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAG                         GACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC
genomic: TTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 102

CCGGTCAAAATGCCATAAAAATTTTAAGATGAAGAGGAATCCTCGTAAGGTTAAATGGACAAAAGCATACAGATGCTTGCATGGGAAGGACATGACGCAGgtatttgctt ... ttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGACCGGAATGTCACTGCACAAACTCTTAAGGCTATCCCTCTTATTACAAAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgctgtgaaccactttctatgctgtgaaccacatctgaatcgtttgaaatcagGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAGCGCTATGACCGGAATGTCACTGCACAAACTCTTAAGGCTATCCCTCTTATTACAAAGA
                                            tttgaaat  TA-rich tract