Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatcatatagtattagtttgaattgaaaaaaattatatatatatataattagggaaatttatatatatgatatgatgtgaaaaaaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGGATCGGAAGTATCCGACGGGGATGAGGACGAACAGGGCGACGGAGGCGGG

Basic information

species Oryza sativa
transcript LOC_Os01g29840.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g29840.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA19G28520.1 (Glycine max), 3'ss of exon 1
gtaaacatcatatagtattagtttgaattgaaaaaaattatat-atatatataattagg---gaaatttatatatatgatatgatgtgaaaaaaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGGATCGGAAGTATCCGACGGGGATGAGGACGAACAGGGCGACGGAGGCGGG---
|| |||    ||    |||  ||  ||| | ||| | |  | |  |   |||  | |||   |||    ||||  |  |  |   || ||       || || ||| || |||||    |||||||| |||||||| |||| |||||| |||||| ||||||| || || ||||||||||| || || || || ||  | ||   
gtcaac--tgtaataaattcattgtaatagcaaacattcttcttgtgattattttgaggttcgaatgaaatattgactaggttgggttaatgtgttgtgcagAGAAAGCCAAGATA---GGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTACCCAACTGGGATGAGGACCAATAGAGCAACAGAATCTGGGTA

upper sequence: LOC_Os01g29840.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------------------gtaa-acatcatatagtat----tagtttgaattgaaaaaaattatatatatatataattagggaaatttatatatatgatat-gatgtgaaaaaaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGGATCGGAAGTATCCGACGGGGATGAGGACGAACAGGGCGACGGAGGCGGG---
                         |||  |  |  | |||| |    |  |  |||||     |   | |  |   | ||     |    ||| | ||   |    | | || ||||  |   || || ||| |||||| |    ||||||||||||||||| |||| | ||| |  |||||| |||||||||||||| ||| | || || || || || ||   |||   
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTA---GGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|95100899|gb|CI692621.1|CI692621
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88343665|gb|CI677648.1|CI677648
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88583519|gb|CI701006.1|CI701006
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAG
EST: gi|88369836|gb|CI680510.1|CI680510
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAAAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88393937|gb|CI684204.1|CI684204
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88593072|gb|CI711223.1|CI711223
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88587969|gb|CI705755.1|CI705755
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88460089|gb|CI695287.1|CI695287
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88592523|gb|CI710629.1|CI710629
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88322050|gb|CI673202.1|CI673202
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88371896|gb|CI681409.1|CI681409
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88401270|gb|CI685266.1|CI685266
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88588897|gb|CI706743.1|CI706743
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATT
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATT
EST: gi|88590684|gb|CI707563.1|CI707563
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGT
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGT
EST: gi|95100592|gb|CI692292.1|CI692292
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88391917|gb|CI683734.1|CI683734
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88592499|gb|CI710605.1|CI710605
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCCAGAAG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCC-AGAAG
EST: gi|88337971|gb|CI676952.1|CI676952
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88576734|gb|CI673257.1|CI673257
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88440890|gb|CI693465.1|CI693465
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88577783|gb|CI674393.1|CI674393
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88584820|gb|CI702399.1|CI702399
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCT
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCT
EST: gi|95101169|gb|CI692904.1|CI692904
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88400985|gb|CI684963.1|CI684963
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88425645|gb|CI689292.1|CI689292
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCA
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCA
EST: gi|88334630|gb|CI676415.1|CI676415
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88588554|gb|CI706377.1|CI706377
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88379096|gb|CI681929.1|CI681929
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88578513|gb|CI687449.1|CI687449
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88589810|gb|CI708622.1|CI708622
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAG
EST: gi|88440953|gb|CI693531.1|CI693531
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88583600|gb|CI701096.1|CI701096
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGA
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGA
EST: gi|88458223|gb|CI695404.1|CI695404
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88325421|gb|CI675222.1|CI675222
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88590617|gb|CI708395.1|CI708395
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGC
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGC
EST: gi|88460108|gb|CI695308.1|CI695308
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88579949|gb|CI691946.1|CI691946
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88436480|gb|CI691200.1|CI691200
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88440980|gb|CI693560.1|CI693560
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88581464|gb|CI698455.1|CI698455
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88588754|gb|CI706593.1|CI706593
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88375480|gb|CI681253.1|CI681253
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88405004|gb|CI685443.1|CI685443
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88414391|gb|CI691551.1|CI691551
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88427739|gb|CI689606.1|CI689606
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCC
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCC
EST: gi|88588664|gb|CI706500.1|CI706500
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88594175|gb|CI711415.1|CI711415
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88959102|gb|CI685813.1|CI685813
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88588567|gb|CI706392.1|CI706392
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88349216|gb|CI678191.1|CI678191
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|1631969|gb|C19698.1|C19698
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTNCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88355588|gb|CI679310.1|CI679310
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88588397|gb|CI706212.1|CI706212
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
EST: gi|88580313|gb|CI697230.1|CI697230
EST:     TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAG                         GGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG
genomic: TGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 65 (downstream exon)
Score: 152

ACCTTTTACCTTGCACCCAAGGTTGTGGACAGCAGGGGCTTTTGCGTGGCTGCCATTGGAGAGGTGGATCTCAACAAGTGCGAGCCATGGGACTTGCCAGgtaaacatca ... aaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGGATCGGAAGTATCCGACGGGGATGAGGACGAACAGGGCGACGGAGGCGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatataattagggaaatttatatatatgatatgatgtgaaaaaaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGGATCGGAAGTATCCGACGGGGATGAGGACGAACAGGGCGACGGAGGCGGG
                aaatttatatatatga  TA-rich tract