Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88482981|gb|CI420252.1|CI420252EST: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG ACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
EST:
gi|89172889|gb|CI040782.1|CI040782EST: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG ACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
EST:
gi|88517650|gb|CI445304.1|CI445304EST: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG ACCACCTGTTCGATGGAATGCAACAGAAAGGAGGACACTTTCAGCCAGATT
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAG-AGGACACTTTCAGCCAGATT
EST:
gi|88521752|gb|CI448419.1|CI448419EST: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG ACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccagaagcttttattctttcctggttgatgtggttgtcacccttgtctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTGCATTAGCACCAACACTGCTTGGTGGACGTGAGTACTACACTATCCACAT
ggttgat putative branch site (score: 5)
cccttgtct putative PPT
ttttattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtggatggtttagttcctatttgtcaatactgatttctcacaagatacaatttctgatttttctctatgcgctggggatgatggccatgtagcttccagaagcttttattctttcctggttgatgtggttgtcacccttgtctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTGCATTAGCACCAACACTGCTTGGTGGACGTGAGTACTACACTATCCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA