1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgcttcacatggaaaaaaataaatattcttatgcaccatgctcgttgtctgttcactttctgctgcttaactgttttgattgaatcttactttttgtagATTTTAGAGGAAATACTCCCAGAAGGAATAATCGTTCCTACAGGGTTTGAGACAGTAGGGCATATTGCACACTTGAACTTGAGGGATGACCATTTACCTT
species | Oryza sativa |
transcript | LOC_Os01g29409.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCAATGCCAATTGACCTTGTTCTACAATTACTGGCCAATGAATGAG ATTTTAGAGGAAATACTCCCAGAAGGAATAATTGTTCCTACAGGGTTTGAGEST: gi|29618955|gb|CB623967.1|CB623967
genomic: TTGTGCAATGCCAATTGACCTTGTTCTACAATTACTGGCCAATGAATGAGgtattttgcc ... ctttttgtagATTTTAGAGGAAATACTCCCAGAAGGAATAATCGTTCCTACAGGGTTTGAG
EST: TTGTGCAATGCCAATTGACCTTGTTCTACAATTACTGGCCAATGAATGAG ATTTTAGAGGAAATACTCCCAGAAGGAATAATTGTTCCTACAGGGTTTGAG
genomic: TTGTGCAATGCCAATTGACCTTGTTCTACAATTACTGGCCAATGAATGAGgtattttgcc ... ctttttgtagATTTTAGAGGAAATACTCCCAGAAGGAATAATCGTTCCTACAGGGTTTGAG
ttgtctgttcactttctgctgcttaactgttttgattgaatcttactttttgtagATTTTAGAGGAAATACTCCCAGAAGGAATAATCGTTCCTACAGGGTTTGAGACAGTAGGGCATATTGCACACTTGAACTTGAGGGATGACCATTTACCTT
atcttac putative branch site (score: 7)
tcttacttttt CT-rich tract
ttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttcacatggaaaaaaataaatattcttatgcaccatgctcgttgtctgttcactttctgctgcttaactgttttgattgaatcttactttttgtagATTTTAGAGGAAATACTCCCAGAAGGAATAATCGTTCCTACAGGGTTTGAGACAGTAGGGCATATTGCACACTTGAACTTGAGGGATGACCATTTACCTT
ttgcttc
- - - - - - -aaaaaaa
- - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg