Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagtagaagtttatgacatgctattaagaaaatttaggtgaactaaatccttattatgccttttttgttttcttctgacacaattgtaagtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTGCGACAGCGACGAGCGGCTTCTCATCGCCGAGTTCATGCCCAACGACACC

Basic information

species Oryza sativa
transcript LOC_Os01g28989.5
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668997|gb|CB665272.1|CB665272
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
EST: gi|58694230|gb|CK082917.1|CK082917
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
EST: gi|29623281|gb|CB628292.1|CB628292
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAACTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
EST: gi|33683399|gb|CF311638.1|CF311638
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
EST: gi|29671852|gb|CB668127.1|CB668127
EST:     GATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: GATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
EST: gi|29671851|gb|CB668126.1|CB668126
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
EST: gi|29658148|gb|CB654423.1|CB654423
EST:     TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAG                         AGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG
genomic: TTATATGATCCAGCATTATGAAGTAACCATCAACTGATCTAAGCTGGGAGgtaatttcta ... gtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatccttattatgccttttttgttttcttctgacacaattgtaagtttgtttagAGTACTGTAAGCTGTGGCACCGGGGATGGCCAACCTCATTGGCTACTGCTGCGACAGCGACGAGCGGCTTCTCATCGCCGAGTTCATGCCCAACGACACC
                            ttctgac  putative branch site (score: 2)
                                              tttgttt  putative PPT
                ttttttgttttctt  TA-rich tract