1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggattaaatatttctgcaccttatttagtttcatttgtattatacatcttgcttgtactgtttgaccaatggtagaatattgtgaccacttctgttcagGCTAGGAAGAGAAAGCTTGGATTGCTTGAGGACGAGGACATTGCTAATTTGGCCTCTGCAGCTTCTGCTCAGGGCAGCGAGTTTGCAGAGAAGGATGCAG
species | Oryza sativa |
transcript | LOC_Os01g27730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
catcttgcttgtactgtttgaccaatggtagaatattgtgaccacttctgttcagGCTAGGAAGAGAAAGCTTGGATTGCTTGAGGACGAGGACATTGCTAATTTGGCCTCTGCAGCTTCTGCTCAGGGCAGCGAGTTTGCAGAGAAGGATGCAG
gtttgac putative branch site (score: 42)
cttctgttc putative PPT
tagaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggattaaatatttctgcaccttatttagtttcatttgtattatacatcttgcttgtactgtttgaccaatggtagaatattgtgaccacttctgttcagGCTAGGAAGAGAAAGCTTGGATTGCTTGAGGACGAGGACATTGCTAATTTGGCCTCTGCAGCTTCTGCTCAGGGCAGCGAGTTTGCAGAGAAGGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - -tttctgc
- - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgacc