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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgttgccccacctgctgcagagaagaagagcattatatatcgatccttggctcgaaattaaacttacgatgtacgttctggatgattttactgtggcgcagGCACGGTGTGGACCAGCCTCGGAACCCGTGGTCTGACGGGCCGGAGTTCATCACACAGTGCCCGATCCGGCCGGGCGGCAACTTCACCTACCAGGTGATC

Basic information

species Oryza sativa
transcript LOC_Os01g27700.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggctcgaaattaaacttacgatgtacgttctggatgattttactgtggcgcagGCACGGTGTGGACCAGCCTCGGAACCCGTGGTCTGACGGGCCGGAGTTCATCACACAGTGCCCGATCCGGCCGGGCGGCAACTTCACCTACCAGGTGATC
              aacttac  putative branch site (score: 2)
                                       ttttact  putative PPT
        aaattaaactta  TA-rich tract