1 5' 3' | 2 5' 3' | 3 5' 3' |
...attagttctcaatactaaaccctgatcaagttgcatactagcatatggtcgcaatgttcattgcaagattttgtactgattgggagttatacatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTGGAAATGATGTTCTGTTAGAAAATGGAGAAATTGACCGAGCTCGCTTAG
species | Oryza sativa |
transcript | LOC_Os01g25880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|88314179|gb|CI602511.1|CI602511
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|88301045|gb|CI592225.1|CI592225
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTACAAGCTTTTEST: gi|88313188|gb|CI594818.1|CI594818
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|38473157|gb|CF957289.1|CF957289
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTGGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGTACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|88300648|gb|CI587452.1|CI587452
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|58595486|gb|CK006014.1|CK006014
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|88387818|gb|CI587906.1|CI587906
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|88386515|gb|CI575293.1|CI575293
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|33689062|gb|CF317301.1|CF317301
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTEST: gi|88312093|gb|CI580258.1|CI580258
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
EST: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGG AATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
genomic: TGTTCAAGGCTAGCGGCATTCCTGTTGTTGATGCCGACATTGTTGCTCGGgtaagtaacc ... acatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTT
tggtcgcaatgttcattgcaagattttgtactgattgggagttatacatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTGGAAATGATGTTCTGTTAGAAAATGGAGAAATTGACCGAGCTCGCTTAG
tactgat putative branch site (score: 16)
ttatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagttctcaatactaaaccctgatcaagttgcatactagcatatggtcgcaatgttcattgcaagattttgtactgattgggagttatacatttgcagAATGTGGTACAGAAAGGCACTGGAGGTTGGAAGAAGATTGTAGAAGCTTTTGGAAATGATGTTCTGTTAGAAAATGGAGAAATTGACCGAGCTCGCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg