1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttaattaggagttgtacttcttctgaatacacattctgctaatctgatgctgccaactgatgattgaactggttgccttcttttgcttgcagCTAATAAATCACAGCGTCCCAGAAGATGTGGTTGATGGGATGAAGGCCAACGCCCGGGGATTCTTTGAGCTGCCAGCGGAAACCAAGAAGCAGTTTGCTC
species | Oryza sativa |
transcript | LOC_Os01g24980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAGATGGCACGTCTTGACAGGGCCTGCCAGGACTGGGGCTTTTTCCAG CTAATAAATCACAGCGTCCCAGAAGATGTGGTTGATGGGATGAAGGCCAACEST: gi|29663537|gb|CB659812.1|CB659812
genomic: AGGAGATGGCACGTCTTGACAGGGCCTGCCAGGACTGGGGCTTTTTCCAGgttaattagg ... ttgcttgcagCTAATAAATCACAGCGTCCCAGAAGATGTGGTTGATGGGATGAAGGCCAAC
EST: AGGAGATGGCACGTCTTGACAGGGCCTGCCAGGACTGGGGCTTTTTCCAG CTAATAAATCACAGCGTCCCATAAGATGTGGTTGATGGGATGAAGGCCAAC
genomic: AGGAGATGGCACGTCTTGACAGGGCCTGCCAGGACTGGGGCTTTTTCCAGgttaattagg ... ttgcttgcagCTAATAAATCACAGCGTCCCAGAAGATGTGGTTGATGGGATGAAGGCCAAC
gctaatctgatgctgccaactgatgattgaactggttgccttcttttgcttgcagCTAATAAATCACAGCGTCCCAGAAGATGTGGTTGATGGGATGAAGGCCAACGCCCGGGGATTCTTTGAGCTGCCAGCGGAAACCAAGAAGCAGTTTGCTC
ttgccttcttttgctt CT-rich tract
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaattaggagttgtacttcttctgaatacacattctgctaatctgatgctgccaactgatgattgaactggttgccttcttttgcttgcagCTAATAAATCACAGCGTCCCAGAAGATGTGGTTGATGGGATGAAGGCCAACGCCCGGGGATTCTTTGAGCTGCCAGCGGAAACCAAGAAGCAGTTTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC