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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttacactgcttaattaaggttaaccacttaatttacaaggtgattcctataatagcagaaataatccaacaaattaaacgatgttactgcagattaaactgggctcctctgagcagATCAAGGAGATTTCTGGAACCCATGGCCCAGTCTATGATCTGGCTGACATTGTCACCTATCTTAAGATTGTGACAAGTGCTAATAATACATACGAGGCTG

Basic information

species Oryza sativa
transcript LOC_Os01g24710.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38480707|gb|CF964796.1|CF964796
EST:     AGGAATATGCCATTGGTCCATGGGGTGGGGGCGAAGGCACCTCTACAGAG                         ATCAAGGAGATTTCTGGAACCCATGGCCCAGTCTATGATCTGGCTGACATT
genomic: AGGAATATGCCATTGGTCCATGGGGTGGGGGCGAAGGCACCTCTACAGAGgtaatttaca ... ctctgagcagATCAAGGAGATTTCTGGAACCCATGGCCCAGTCTATGATCTGGCTGACATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatccaacaaattaaacgatgttactgcagattaaactgggctcctctgagcagATCAAGGAGATTTCTGGAACCCATGGCCCAGTCTATGATCTGGCTGACATTGTCACCTATCTTAAGATTGTGACAAGTGCTAATAATACATACGAGGCTG
                                          ctcctct  CT-rich tract
      aacaaattaaa  TA-rich tract