1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttcttagattgcctcattggatgaggttcttgataaagctcatatcattcagtatctgctaattaatatggtttctgtgcactatatttttcagttcagAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTATCATACCAACTACCAACAACAAGCTTATGGGATAGGCTTGGGAGGGTTAC
species | Oryza sativa |
transcript | LOC_Os01g24470.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG TEST: gi|88401531|gb|CI588472.1|CI588472
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... ttcagttcag-
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG TEST: gi|88401531|gb|CI588472.1|CI588472
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... ttcagttcag-
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG TEST: gi|88401531|gb|CI588472.1|CI588472
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... ttcagttcag-
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG TEST: gi|88370302|gb|CI587692.1|CI587692
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... ttcagttcag-
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG AAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTAT
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... ttcagttcagAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTAT
tcattcagtatctgctaattaatatggtttctgtgcactatatttttcagttcagAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTATCATACCAACTACCAACAACAAGCTTATGGGATAGGCTTGGGAGGGTTAC
tatttttc CT-rich tract
taattaatatggttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttagattgcctcattggatgaggttcttgataaagctcatatcattcagtatctgctaattaatatggtttctgtgcactatatttttcagttcagAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTATCATACCAACTACCAACAACAAGCTTATGGGATAGGCTTGGGAGGGTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - -ttggatg
- - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - atctgct