1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acgatgttcttagattgcctcattggatgaggttcttgataaagctcatatcattcagtatctgctaattaatatggtttctgtgcactatatttttcagTTCAGAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTATCATACCAACTACCAACAACAAGCTTATGGGATAGGCTTGGGAGG
species | Oryza sativa |
transcript | LOC_Os01g24470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG TTCAGAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGEST: gi|88370302|gb|CI587692.1|CI587692
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... tatttttcagTTCAGAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAG
EST: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAG ---A-A-GGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAG
genomic: TCTCCGCAGCAGCCCAGGTCTGGTGGATTTGCTGCCCAATCTTCAGTCAGgtatatatca ... tatttttcagTTCAGAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAG
tcatatcattcagtatctgctaattaatatggtttctgtgcactatatttttcagTTCAGAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTATCATACCAACTACCAACAACAAGCTTATGGGATAGGCTTGGGAGG
tatttttc CT-rich tract
taattaatatggttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgatgttcttagattgcctcattggatgaggttcttgataaagctcatatcattcagtatctgctaattaatatggtttctgtgcactatatttttcagTTCAGAAGGACTAGAACTTGGTCACCCTTATAGCGATGCGATTGACTATAGCTTATCATACCAACTACCAACAACAAGCTTATGGGATAGGCTTGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - tgttctt
- - - - - - - - - - - ttggatg
- - - - - - - - - - - - - - - -gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctgct