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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtttgttgtttatcttcccctcatatctaatagaacaaatttcagaaatgttgctgtacttgaagctcaaatattacgtgcaccatgtttgcacaaggccttggttttgcaatgagcaatttttttttttttggttatactcagGTCTACCTGGTCCAGTCGATGCTGAAGGGTTCCGAAATGCTCTATACATGATAGATATCGGACAAAATGATGTTAATGCTCTTCTGTCCTACTTGTCTTA

Basic information

species Oryza sativa
transcript LOC_Os01g22660.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218502135|gb|FG944929.1|FG944929
EST:     CAGAGACAGATCCTTAGAACTCATCAGTCAA-                         GTCTACCTGGTCCAGTCGATGCTGAAGGCTTCCGAAATGCTCTATACATGA
genomic: CAGAGACAGATCCTTAGAACTCATCAGTCAAGgttcgtttgt ... ttatactcagGTCTACCTGGTCCAGTCGATGCTGAAGGGTTCCGAAATGCTCTATACATGA
EST: gi|218493738|gb|FG944163.1|FG944163
EST:     GAAACAATTCTTGTTCTTCAGAGACAGATCCTTAGAACTCATCAGTCAAG                         GTCTACCTGGTCCAGTCGATGCTGAAGGCTTCCGAAATGCTCTATACATGA
genomic: GAAACAATTCTTGTTCTTCAGAGACAGATCCTTAGAACTCATCAGTCAAGgttcgtttgt ... ttatactcagGTCTACCTGGTCCAGTCGATGCTGAAGGGTTCCGAAATGCTCTATACATGA
EST: gi|58685309|gb|CK073996.1|CK073996
EST:     GAAACAATTCTTGTTCTTCAGAGACAGATCCTTAGAACTCATCAGTCAAG                         GTCTACCTGGTCCAGTCGATGCTGAAGGGTTCCGAAATGCTCTATACATGA
genomic: GAAACAATTCTTGTTCTTCAGAGACAGATCCTTAGAACTCATCAGTCAAGgttcgtttgt ... ttatactcagGTCTACCTGGTCCAGTCGATGCTGAAGGGTTCCGAAATGCTCTATACATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacaaggccttggttttgcaatgagcaatttttttttttttggttatactcagGTCTACCTGGTCCAGTCGATGCTGAAGGGTTCCGAAATGCTCTATACATGATAGATATCGGACAAAATGATGTTAATGCTCTTCTGTCCTACTTGTCTTA
                              tttttttttttttggt  CT-rich tract
                            aatttttttttttttg  TA-rich tract