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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaacatgaactggcagcttgctttcgtccacatgttatctgttgtgctttatttctctttatgctgtcgggtcgtaatacatttattgaatgcagAAGTTGGATCACCTACGGAATGGTATAATAACCAAAGCTCTTTAGGATATGATGGCCAAGACATCTATTTTCCG

Basic information

species Oryza sativa
transcript LOC_Os01g22630.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g22630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G098174_T01 (Zea mays), 3'ss of exon 3
gtaaaaacatgaactggcagcttgctttcgtccacatgttatctgttgtgctttatttctctt--tatgctgtcgggtcgtaatacatttattgaatgcagAAGTTGGATCACCTACGGAATGGTATAATAACCAAAGCTCTTTAGGATATGATGGCCAAGACATCTATTTTCCG
||||||    ||| || |    |   || ||        | ||  | ||||||   | || |   |||    |    | ||||   |||| |  |||||||||||||||||||  | |||||||| |||  |    |||||||||||||||||||||||||| |  |  | ||||
gtaaaag---gaaatgtc---ctatctttgtattatgcctgtccttggtgcttacctcctttcagtatttcatttcatggtaaccaatttgtcaaatgcagAAGTTGGATCACAGATGGAATGGTGTAACCAGTCGAGCTCTTTAGGATATGATGGCCAAGATAATTTCTATCCG

upper sequence: LOC_Os01g22630.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G056573_T01 (Zea mays), 3'ss of exon 3
gtaaaaacatgaactggcagcttgctttcgtccacatgttatctgttgtgctttatttctctttatgctgtcgggtcgtaatacatttattgaatgcagAAGTTGGATCACCTACGGAATGGTATAATAACCAAAGCTCTTTAGGATATGATGGCCAAGACATCTATTTTCCG
         | ||  |  |  ||  | |  | |   |  | | || | ||| |  || | ||  ||    |  | | ||||   |||| |  |||||||||||||||||||| | ||||||||||| | |||  | ||||| |||||||| | ||||||| || |  | | ||
--------gtaaagggaaatgtttgtattatgcctgtcctttgtgct-tgcctccttccact--atttcatttgattgtaaccaatttgtcaaatgcagAAGTTGGATCACCAATGGAATGGTATAGTCACCCGAACTCTTCAGGATATGCTAGCCAAGATATTTTCTATTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgctttatttctctttatgctgtcgggtcgtaatacatttattgaatgcagAAGTTGGATCACCTACGGAATGGTATAATAACCAAAGCTCTTTAGGATATGATGGCCAAGACATCTATTTTCCG
                                  taatacatttattgaa  TA-rich tract