1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtatacagttgaactctagttttccaatagcatgtgtacaactttgttcacttacaaaaatgtttctcgcatcacaagttttttaacatgaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTGAAGGTGCACTGGGGTACACAATGACCCAAATCTGTGATAAGTTTATTGA
species | Oryza sativa |
transcript | LOC_Os01g20110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTG GGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTGEST: gi|58689419|gb|CK078106.1|CK078106
genomic: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTGgtaatttctt ... gaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTG
EST: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTG GGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTGEST: gi|58683301|gb|CK071988.1|CK071988
genomic: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTGgtaatttctt ... gaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTG
EST: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTG GGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTGEST: gi|88348425|gb|CI639084.1|CI639084
genomic: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTGgtaatttctt ... gaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTG
EST: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTG GGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTG
genomic: GGAACCAAACATGCTTCATTCCCCCAAGCCATTGATGTCCACCAGACGTGgtaatttctt ... gaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTG
tgttcacttacaaaaatgtttctcgcatcacaagttttttaacatgaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTGAAGGTGCACTGGGGTACACAATGACCCAAATCTGTGATAAGTTTATTGA
ttttaac putative branch site (score: 11)
ttttttaacatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatacagttgaactctagttttccaatagcatgtgtacaactttgttcacttacaaaaatgtttctcgcatcacaagttttttaacatgaaattgcagGGTGTGTGGCTAGTCCTACTATTGCTAATGTGGATGACTGCACTGAAGGTGAAGGTGCACTGGGGTACACAATGACCCAAATCTGTGATAAGTTTATTGA
- - - - - - - - - - - - - - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcac