1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagatatgcaagccttgttggtgctgttgctttttcgtgtaaaaattgctcgtatcttgttaatactgatattttttttccattgctaatttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAG
species | Oryza sativa |
transcript | LOC_Os01g18800.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATT GCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGEST: gi|29682962|gb|CB679237.1|CB679237
genomic: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTgtaagatatg ... atttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAG
EST: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATT GCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGEST: gi|24468762|gb|CA305711.1|CA305711
genomic: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTgtaagatatg ... atttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAG
EST: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATT GCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGEST: gi|29624069|gb|CB629080.1|CB629080
genomic: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTgtaagatatg ... atttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAG
EST: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATT GCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGEST: gi|4714882|gb|AU055999.1|AU055999
genomic: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTgtaagatatg ... atttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAG
EST: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATT GCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGEST: gi|58659268|gb|CK047948.1|CK047948
genomic: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTgtaagatatg ... atttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAG
EST: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATT GCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTGGGGCCAGCA
genomic: TTTACATGGTGCTTGAATATGTCAATGGAGGCGAGCTCTTTGACAAGATTgtaagatatg ... atttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACT-TTTCCAGCA
aattgctcgtatcttgttaatactgatattttttttccattgctaatttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAG
tgctaat putative branch site (score: 2)
ttttt CT-rich tract
tatcttgttaatactg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatgcaagccttgttggtgctgttgctttttcgtgtaaaaattgctcgtatcttgttaatactgatattttttttccattgctaatttttgaagGCCGTAAAAGGAAAACTCTCTGAACATGAAGGAAGGAGACTTTTCCAGCAGTTAATCGATGCTGTGAGCTATTGCCATGATAAAGGTGTCTACCACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG